blast 2.14.1 -> 2.15.0 https://repology.org/project/ncbi-blast+/versions attrpath: blast Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoSha256 or cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript Diff after rewrites: diff --git a/pkgs/applications/science/biology/blast/default.nix b/pkgs/applications/science/biology/blast/default.nix index 407d38970b0f..6b1a34e30857 100644 --- a/pkgs/applications/science/biology/blast/default.nix +++ b/pkgs/applications/science/biology/blast/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "blast"; - version = "2.14.1"; + version = "2.15.0"; src = fetchurl { url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-src.tar.gz"; - sha256 = "sha256-cSwtvfD7E8wcLU9O9d0c5LBsO1fpbf6o8j5umfWxZQ4="; + sha256 = "sha256-aRjDcFJMjUTgKL9JHo8kWoleB8Zsd7Jhzjs41gWCFuA="; }; sourceRoot = "ncbi-blast-${version}+-src/c++"; Received ExitFailure 1 when running Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A blast nix build failed. ln -f libid2.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libid2.so ln -f .id2.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.id2.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objects/id2' awk: /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/is_log_interesting.awk:4: fatal: cannot open file `make_id2.log.new' for reading: No such file or directory make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objects/id2' rm -f libxobjread.so .libxobjread.so.stamp /nix/store/khkhbch4p1wjfl1g89gw1mszvvr7bzv0-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libxobjread.so -Wl,-rpath,/nix/store/np3cndfk53miqg2cilv7vfdxckga665h-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/mrvg7mg5h9ccq9lk098jl7z7n5lzqq09-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lm -lpthread /nix/store/cjbyb45nxiqidj95c4k1mh65azn1x896-bash-5.2-p21/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/5idwbbv23b6vnqdicx97s3hsgrwwnj7j-coreutils-9.4/bin/ln -f libxobjread.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libxobjread.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libxobjread.so ln -f .xobjread.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.xobjread.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/readers' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/readers' rm -f libxobjmgr.so .libxobjmgr.so.stamp /nix/store/khkhbch4p1wjfl1g89gw1mszvvr7bzv0-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libxobjmgr.so -Wl,-rpath,/nix/store/np3cndfk53miqg2cilv7vfdxckga665h-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/mrvg7mg5h9ccq9lk098jl7z7n5lzqq09-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /nix/store/cjbyb45nxiqidj95c4k1mh65azn1x896-bash-5.2-p21/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/5idwbbv23b6vnqdicx97s3hsgrwwnj7j-coreutils-9.4/bin/ln -f libxobjmgr.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libxobjmgr.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libxobjmgr.so ln -f .xobjmgr.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.xobjmgr.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objmgr' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objmgr' rm -f libefetch.so .libefetch.so.stamp /nix/store/khkhbch4p1wjfl1g89gw1mszvvr7bzv0-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libefetch.so -Wl,-rpath,/nix/store/np3cndfk53miqg2cilv7vfdxckga665h-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/mrvg7mg5h9ccq9lk098jl7z7n5lzqq09-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC efetch__.o efetch___.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lm -lpthread /nix/store/cjbyb45nxiqidj95c4k1mh65azn1x896-bash-5.2-p21/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/5idwbbv23b6vnqdicx97s3hsgrwwnj7j-coreutils-9.4/bin/ln -f libefetch.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libefetch.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libefetch.so ln -f .efetch.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.efetch.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[2]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build' make[1]: *** [Makefile.flat:330: ptb_all] Error 2 make[1]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build' make: *** [Makefile:24: all] Error 2