blast 2.14.1 -> 2.15.0 https://repology.org/project/ncbi-blast+/versions attrpath: blast Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoSha256 or cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript Diff after rewrites: diff --git a/pkgs/applications/science/biology/blast/default.nix b/pkgs/applications/science/biology/blast/default.nix index 407d38970b0f..6b1a34e30857 100644 --- a/pkgs/applications/science/biology/blast/default.nix +++ b/pkgs/applications/science/biology/blast/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "blast"; - version = "2.14.1"; + version = "2.15.0"; src = fetchurl { url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-src.tar.gz"; - sha256 = "sha256-cSwtvfD7E8wcLU9O9d0c5LBsO1fpbf6o8j5umfWxZQ4="; + sha256 = "sha256-aRjDcFJMjUTgKL9JHo8kWoleB8Zsd7Jhzjs41gWCFuA="; }; sourceRoot = "ncbi-blast-${version}+-src/c++"; Received ExitFailure 1 when running Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A blast nix build failed. /nix/store/5l50g7kzj7v0rdhshld1vx46rf2k5lf9-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/bicmg5gd50q6igk0y5mga1v0p1lk8f26-coreutils-9.4/bin/ln -f libseqedit.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libseqedit.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libseqedit.so ln -f .seqedit.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.seqedit.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objects/seqedit' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objects/seqedit' rm -f libblastdb_format.so .libblastdb_format.so.stamp /nix/store/4cjqvbp1jbkps185wl8qnbjpf8bdy8j9-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libblastdb_format.so -Wl,-rpath,/nix/store/1s98ricsglmfjjqkfnpvywnip5z7gp9q-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/l1yg188sarfwnbzfcl2yn255lkfi8ksn-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lm -lpthread /nix/store/5l50g7kzj7v0rdhshld1vx46rf2k5lf9-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/bicmg5gd50q6igk0y5mga1v0p1lk8f26-coreutils-9.4/bin/ln -f libblastdb_format.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libblastdb_format.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libblastdb_format.so ln -f .blastdb_format.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.blastdb_format.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' rm -f libxnetblast.so .libxnetblast.so.stamp /nix/store/4cjqvbp1jbkps185wl8qnbjpf8bdy8j9-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libxnetblast.so -Wl,-rpath,/nix/store/1s98ricsglmfjjqkfnpvywnip5z7gp9q-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/l1yg188sarfwnbzfcl2yn255lkfi8ksn-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC blast__.o blast___.o names.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lseqset -lscoremat -lm -lpthread /nix/store/5l50g7kzj7v0rdhshld1vx46rf2k5lf9-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/bicmg5gd50q6igk0y5mga1v0p1lk8f26-coreutils-9.4/bin/ln -f libxnetblast.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libxnetblast.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libxnetblast.so ln -f .xnetblast.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.xnetblast.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objects/blast' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objects/blast' rm -f libefetch.so .libefetch.so.stamp /nix/store/4cjqvbp1jbkps185wl8qnbjpf8bdy8j9-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libefetch.so -Wl,-rpath,/nix/store/1s98ricsglmfjjqkfnpvywnip5z7gp9q-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/l1yg188sarfwnbzfcl2yn255lkfi8ksn-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC efetch__.o efetch___.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lm -lpthread /nix/store/5l50g7kzj7v0rdhshld1vx46rf2k5lf9-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/bicmg5gd50q6igk0y5mga1v0p1lk8f26-coreutils-9.4/bin/ln -f libefetch.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libefetch.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libefetch.so ln -f .efetch.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.efetch.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[2]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build' make[1]: *** [Makefile.flat:330: ptb_all] Error 2 make[1]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build' make: *** [Makefile:24: all] Error 2