blast 2.14.1 -> 2.15.0 https://repology.org/project/ncbi-blast+/versions attrpath: blast Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoSha256 or cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript Diff after rewrites: diff --git a/pkgs/applications/science/biology/blast/default.nix b/pkgs/applications/science/biology/blast/default.nix index 407d38970b0f..6b1a34e30857 100644 --- a/pkgs/applications/science/biology/blast/default.nix +++ b/pkgs/applications/science/biology/blast/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "blast"; - version = "2.14.1"; + version = "2.15.0"; src = fetchurl { url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-src.tar.gz"; - sha256 = "sha256-cSwtvfD7E8wcLU9O9d0c5LBsO1fpbf6o8j5umfWxZQ4="; + sha256 = "sha256-aRjDcFJMjUTgKL9JHo8kWoleB8Zsd7Jhzjs41gWCFuA="; }; sourceRoot = "ncbi-blast-${version}+-src/c++"; Received ExitFailure 1 when running Raw command: /nix/store/cydbsmqkxk30didm1rlz8ffk5wfa9gva-nix-2.18.2/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A blast nix build failed. 150 | if (mBlockCount != mBlockStartsQ.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast-2.15.0+-src/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wsign-compare-Wsign-compare]8;;] 156 | if (mBlockCount != mBlockStartsT.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /nix/store/ac1hb5dc2z4biwgy8mjrhlifffkkrvdq-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libxalgowinmask.so -Wl,-rpath,/nix/store/c2yb135iv4maadia5f760b3xhbh6jh61-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/75wmnn7sr15jyf749rbxn63plqfyjy72-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O3 -finline-functions -fstrict-aliasing -fomit-frame-pointer -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lm -lpthread /nix/store/a1s263pmsci9zykm5xcdf7x9rv26w6d5-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/ifzwv2xqwdnv1gz87rxkizi67py5p3vj-coreutils-9.4/bin/ln -f libxalgowinmask.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libxalgowinmask.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libxalgowinmask.so ln -f .xalgowinmask.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/algo/winmask' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/algo/winmask' rm -f libxobjread.so .libxobjread.so.stamp /nix/store/ac1hb5dc2z4biwgy8mjrhlifffkkrvdq-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libxobjread.so -Wl,-rpath,/nix/store/c2yb135iv4maadia5f760b3xhbh6jh61-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/75wmnn7sr15jyf749rbxn63plqfyjy72-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lm -lpthread /nix/store/a1s263pmsci9zykm5xcdf7x9rv26w6d5-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/ifzwv2xqwdnv1gz87rxkizi67py5p3vj-coreutils-9.4/bin/ln -f libxobjread.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libxobjread.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libxobjread.so ln -f .xobjread.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.xobjread.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/readers' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/readers' rm -f libefetch.so .libefetch.so.stamp /nix/store/ac1hb5dc2z4biwgy8mjrhlifffkkrvdq-gcc-wrapper-13.2.0/bin/g++ -std=gnu++17 -msse4.2 -shared -o libefetch.so -Wl,-rpath,/nix/store/c2yb135iv4maadia5f760b3xhbh6jh61-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/75wmnn7sr15jyf749rbxn63plqfyjy72-blast-2.15.0/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O2 -fPIC efetch__.o efetch___.o -Wl,-rpath-link,/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -L/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib -lm -lpthread /nix/store/a1s263pmsci9zykm5xcdf7x9rv26w6d5-bash-5.2p26/bin/bash /build/ncbi-blast-2.15.0+-src/c++/scripts/common/impl/if_diff.sh /nix/store/ifzwv2xqwdnv1gz87rxkizi67py5p3vj-coreutils-9.4/bin/ln -f libefetch.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib ln -f libefetch.so /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/lib/libefetch.so ln -f .efetch.dep /build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/status/.efetch.dep make[4]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[3]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' make[2]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build' make[1]: *** [Makefile.flat:330: ptb_all] Error 2 make[1]: Leaving directory '/build/ncbi-blast-2.15.0+-src/c++/ReleaseMT/build' make: *** [Makefile:24: all] Error 2