2022-12-01T23:04:19 freebayes 1.3.1 -> 1.3.6 https://github.com/ekg/freebayes/releases
2022-12-01T23:04:21 attrpath: freebayes
2022-12-01T23:04:21 Checking auto update branch...
2022-12-01T23:04:21 No auto update branch exists
2022-12-01T23:04:25 [version] 
2022-12-01T23:04:52 [version] updated version and sha256
2022-12-01T23:04:52 [rustCrateVersion] 
2022-12-01T23:04:52 [rustCrateVersion] No cargoSha256 found
2022-12-01T23:04:52 [golangModuleVersion] 
2022-12-01T23:04:52 [golangModuleVersion] Not a buildGoModule package with vendorSha256
2022-12-01T23:04:52 [updateScript] 
2022-12-01T23:04:52 [updateScript] skipping because derivation has no updateScript
2022-12-01T23:04:52 
2022-12-01T23:04:52 [quotedUrls]
2022-12-01T23:04:52 [quotedUrls] nothing found to replace
2022-12-01T23:04:53 Diff after rewrites:
diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix
index 5c2f09a4fae..e85c6277b06 100644
--- a/pkgs/applications/science/biology/freebayes/default.nix
+++ b/pkgs/applications/science/biology/freebayes/default.nix
@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   pname = "freebayes";
-  version = "1.3.1";
+  version = "1.3.6";
 
   src = fetchFromGitHub {
     name = "freebayes-${version}-src";
     owner  = "ekg";
     repo   = "freebayes";
     rev    = "v${version}";
-    sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys";
+    sha256 = "sha256-pC443T3DCZEvrD6Ihiq7cvsBq7kS2AQgB2WsgNX6aBo=";
     fetchSubmodules = true;
   };
 

2022-12-01T23:06:22 Received ExitFailure 100 when running
Raw command: /nix/store/6fr58pqy02hmgw1h7b9nqmv7vlp3v346-nix-2.3.15/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A freebayes
nix build failed.
warning: unknown setting 'experimental-features'
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/6l2j8afzqkkndp0pdn3pshbbrz1xg0x4-freebayes-1.3.6-src
source root is freebayes-1.3.6-src
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
no Makefile, doing nothing
@nix { "action": "setPhase", "phase": "installPhase" }
installing
install: creating directory '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6'
install: creating directory '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin'
install: cannot stat 'bin/freebayes': No such file or directory
install: cannot stat 'bin/bamleftalign': No such file or directory
'scripts/GenerateFreebayesRegions.R' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/GenerateFreebayesRegions.R'
'scripts/bgziptabix' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/bgziptabix'
'scripts/coverage_to_regions.py' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/coverage_to_regions.py'
'scripts/fasta_generate_regions.py' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/fasta_generate_regions.py'
'scripts/freebayes-parallel' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/freebayes-parallel'
'scripts/generate_freebayes_region_scripts.sh' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/generate_freebayes_region_scripts.sh'
'scripts/sam_add_rg.pl' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/sam_add_rg.pl'
'scripts/samples.cnv' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/samples.cnv'
'scripts/split_ref_by_bai_datasize.py' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/split_ref_by_bai_datasize.py'
'scripts/update_version.sh' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/update_version.sh'
'scripts/vcffirstheader' -> '/nix/store/cw33ywq13n9g46c1s02vmi0njsrff5hd-freebayes-1.3.6/bin/vcffirstheader'