freebayes 1.3.1 -> 1.3.7 https://github.com/ekg/freebayes/releases attrpath: freebayes Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoSha256 or cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript [quotedUrls] [quotedUrls] nothing found to replace Diff after rewrites: diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix index 0ceaab4ab46b..603a193cfac6 100644 --- a/pkgs/applications/science/biology/freebayes/default.nix +++ b/pkgs/applications/science/biology/freebayes/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "freebayes"; - version = "1.3.1"; + version = "1.3.7"; src = fetchFromGitHub { name = "freebayes-${version}-src"; owner = "ekg"; repo = "freebayes"; rev = "v${version}"; - sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys"; + sha256 = "sha256-PwYTkngmX+ku51kCyIo5YEkPxtzdvlDiQye73WVO1gM="; fetchSubmodules = true; }; Received ExitFailure 1 when running Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A freebayes nix build failed. unpacking sources unpacking source archive /nix/store/mcnbrdn06bjpjddbxrm4an3fb6000q88-freebayes-1.3.7-src source root is freebayes-1.3.7-src @nix { "action": "setPhase", "phase": "patchPhase" } patching sources @nix { "action": "setPhase", "phase": "updateAutotoolsGnuConfigScriptsPhase" } updateAutotoolsGnuConfigScriptsPhase @nix { "action": "setPhase", "phase": "configurePhase" } configuring no configure script, doing nothing @nix { "action": "setPhase", "phase": "buildPhase" } building no Makefile or custom buildPhase, doing nothing @nix { "action": "setPhase", "phase": "installPhase" } installing install: creating directory '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7' install: creating directory '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin' install: cannot stat 'bin/freebayes': No such file or directory install: cannot stat 'bin/bamleftalign': No such file or directory 'scripts/GenerateFreebayesRegions.R' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/GenerateFreebayesRegions.R' 'scripts/bgziptabix' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/bgziptabix' 'scripts/coverage_to_regions.py' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/coverage_to_regions.py' 'scripts/fasta_generate_regions.py' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/fasta_generate_regions.py' 'scripts/freebayes-parallel' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/freebayes-parallel' 'scripts/generate_freebayes_region_scripts.sh' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/generate_freebayes_region_scripts.sh' 'scripts/sam_add_rg.pl' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/sam_add_rg.pl' 'scripts/samples.cnv' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/samples.cnv' 'scripts/split_ref_by_bai_datasize.py' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/split_ref_by_bai_datasize.py' 'scripts/update_version.sh' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/update_version.sh' 'scripts/vcffirstheader' -> '/nix/store/hm81ssbjxcha45nm2l5zcvdh29v40zwn-freebayes-1.3.7/bin/vcffirstheader'