kent 466 -> 467 https://repology.org/project/ucsc-genome-browser/versions attrpath: kent Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoSha256 or cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript Diff after rewrites: diff --git a/pkgs/applications/science/biology/kent/default.nix b/pkgs/applications/science/biology/kent/default.nix index 56cfa5168a48..f30a6725bb47 100644 --- a/pkgs/applications/science/biology/kent/default.nix +++ b/pkgs/applications/science/biology/kent/default.nix @@ -13,13 +13,13 @@ }: stdenv.mkDerivation rec { pname = "kent"; - version = "466"; + version = "467"; src = fetchFromGitHub { owner = "ucscGenomeBrowser"; repo = pname; rev = "v${version}_base"; - hash = "sha256-zoDZ+8G0SHKfWmkXBqp+WSjQXtmkcTIZjrjPhUIJw1c="; + hash = "sha256-Y8iHSo70nsPZwVy8ZiiqjU3mGrPOyPQkW0VpLS+ulGE="; }; buildInputs = [ libpng libuuid zlib bzip2 xz openssl curl libmysqlclient ]; Successfully finished processing cachix "/nix/store/6vamzbgvhv2r4h9p3cfpapj07mcaj99m-kent-467" [check][nixpkgs-review] Result of `nixpkgs-review --extra-nixpkgs-config '{ allowInsecurePredicate = x: true; }'` run on x86_64-linux [1](https://github.com/Mic92/nixpkgs-review)
1 package built:
Automatic update generated by [nixpkgs-update](https://github.com/ryantm/nixpkgs-update) tools. This update was made based on information from https://repology.org/project/ucsc-genome-browser/versions. meta.description for kent is: UCSC Genome Bioinformatics Group's suite of biological analysis tools, i.e. the kent utilities meta.homepage for kent is: http://genome.ucsc.edu meta.changelog for kent is: https://github.com/ucscGenomeBrowser/kent/releases/tag/v467_base ###### Updates performed - Version update ###### To inspect upstream changes - [Compare changes on GitHub](https://github.com/ucscGenomeBrowser/kent/compare/v466_base...v467_base) ###### Impact Checks done --- - built on NixOS - The tests defined in `passthru.tests`, if any, passed - found 467 with grep in /nix/store/6vamzbgvhv2r4h9p3cfpapj07mcaj99m-kent-467 - found 467 in filename of file in /nix/store/6vamzbgvhv2r4h9p3cfpapj07mcaj99m-kent-467 ---
Rebuild report (if merged into master) (click to expand) ``` 2 total rebuild path(s) 2 package rebuild(s) First fifty rebuilds by attrpath kent ```
Instructions to test this update (click to expand) --- Either **download from Cachix**: ``` nix-store -r /nix/store/6vamzbgvhv2r4h9p3cfpapj07mcaj99m-kent-467 \ --option binary-caches 'https://cache.nixos.org/ https://nix-community.cachix.org/' \ --option trusted-public-keys ' nix-community.cachix.org-1:mB9FSh9qf2dCimDSUo8Zy7bkq5CX+/rkCWyvRCYg3Fs= cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY= ' ``` (The Cachix cache is only trusted for this store-path realization.) For the Cachix download to work, your user must be in the `trusted-users` list or you can use `sudo` since root is effectively trusted. Or, **build yourself**: ``` nix-build -A kent https://github.com/r-ryantm/nixpkgs/archive/fda000ee3a10687b5a04656c57a865ab8cd1c29b.tar.gz ``` Or: ``` nix build github:r-ryantm/nixpkgs/fda000ee3a10687b5a04656c57a865ab8cd1c29b#kent ``` After you've downloaded or built it, look at the files and if there are any, run the binaries: ``` ls -la /nix/store/6vamzbgvhv2r4h9p3cfpapj07mcaj99m-kent-467 ls -la /nix/store/6vamzbgvhv2r4h9p3cfpapj07mcaj99m-kent-467/bin ``` ---

### Pre-merge build results We have automatically built all packages that will get rebuilt due to this change. This gives evidence on whether the upgrade will break dependent packages. Note sometimes packages show up as _failed to build_ independent of the change, simply because they are already broken on the target branch. Result of `nixpkgs-review --extra-nixpkgs-config '{ allowInsecurePredicate = x: true; }'` run on x86_64-linux [1](https://github.com/Mic92/nixpkgs-review)
1 package built:
--- ###### Maintainer pings cc @scalavision for [testing](https://github.com/ryantm/nixpkgs-update/blob/main/doc/nixpkgs-maintainer-faq.md#r-ryantm-opened-a-pr-for-my-package-what-do-i-do). https://api.github.com/repos/NixOS/nixpkgs/pulls/322330