2022-11-20T03:05:26 sortmerna 4.2.0 -> 4.3.6 https://github.com/biocore/sortmerna/releases
2022-11-20T03:05:28 attrpath: sortmerna
2022-11-20T03:05:28 Checking auto update branch...
2022-11-20T03:05:28 No auto update branch exists
2022-11-20T03:05:32 [version] 
2022-11-20T03:05:47 [version] updated version and sha256
2022-11-20T03:05:47 [rustCrateVersion] 
2022-11-20T03:05:47 [rustCrateVersion] No cargoSha256 found
2022-11-20T03:05:47 [golangModuleVersion] 
2022-11-20T03:05:47 [golangModuleVersion] Not a buildGoModule package with vendorSha256
2022-11-20T03:05:47 [updateScript] 
2022-11-20T03:05:47 [updateScript] skipping because derivation has no updateScript
2022-11-20T03:05:47 
2022-11-20T03:05:47 [quotedUrls]
2022-11-20T03:05:47 [quotedUrls] nothing found to replace
2022-11-20T03:05:47 Diff after rewrites:
diff --git a/pkgs/applications/science/biology/sortmerna/default.nix b/pkgs/applications/science/biology/sortmerna/default.nix
index 6884e1955f7..974894554d7 100644
--- a/pkgs/applications/science/biology/sortmerna/default.nix
+++ b/pkgs/applications/science/biology/sortmerna/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "sortmerna";
-  version = "4.2.0";
+  version = "4.3.6";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "biocore";
     rev = "v${version}";
-    sha256 = "0r91viylzr069jm7kpcgb45kagvf8sqcj5zc1af4arl9sgfs1f3j";
+    sha256 = "sha256-5sYnYmhCLdsfT6ih5CEBkYxfGkP8ZOSgTWU0kY2ZKTA=";
   };
 
   nativeBuildInputs = [ cmake pkg-config ];

2022-11-20T03:07:26 Received ExitFailure 100 when running
Raw command: /nix/store/6fr58pqy02hmgw1h7b9nqmv7vlp3v346-nix-2.3.15/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A sortmerna
nix build failed.
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_v(const string&)':
/build/source/src/sortmerna/options.cpp:819:40: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
  819 | void Runopts::opt_v(const std::string &val)
      |                     ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_dbg_put_db(const string&)':
/build/source/src/sortmerna/options.cpp:937:49: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
  937 | void Runopts::opt_dbg_put_db(const std::string& val)
      |                              ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_cmd(const string&)':
/build/source/src/sortmerna/options.cpp:980:42: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
  980 | void Runopts::opt_cmd(const std::string &val)
      |                       ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_tmpdir(const string&)':
/build/source/src/sortmerna/options.cpp:1036:45: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1036 | void Runopts::opt_tmpdir(const std::string &val)
      |                          ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_align(const string&)':
/build/source/src/sortmerna/options.cpp:1193:44: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1193 | void Runopts::opt_align(const std::string& val)
      |                         ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_filter(const string&)':
/build/source/src/sortmerna/options.cpp:1198:45: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1198 | void Runopts::opt_filter(const std::string& val)
      |                          ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::process(int, char**, bool)':
/build/source/src/sortmerna/options.cpp:1368:50: warning: unused parameter 'dryrun' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1368 | void Runopts::process(int argc, char**argv, bool dryrun)
      |                                             ~~~~~^~~~~~
make[1]: *** [CMakeFiles/Makefile2:216: src/sortmerna/CMakeFiles/smr_objs.dir/all] Error 2
make: *** [Makefile:156: all] Error 2