2022-12-19T01:09:39 sortmerna 4.2.0 -> 4.3.6 https://repology.org/metapackage/sortmerna/versions 2022-12-19T01:09:41 attrpath: sortmerna 2022-12-19T01:09:41 Checking auto update branch... 2022-12-19T01:09:41 No auto update branch exists 2022-12-19T01:09:45 [version] 2022-12-19T01:09:59 [version] updated version and sha256 2022-12-19T01:09:59 [rustCrateVersion] 2022-12-19T01:09:59 [rustCrateVersion] No cargoSha256 found 2022-12-19T01:09:59 [golangModuleVersion] 2022-12-19T01:09:59 [golangModuleVersion] Not a buildGoModule package with vendorSha256 2022-12-19T01:09:59 [updateScript] 2022-12-19T01:09:59 [updateScript] skipping because derivation has no updateScript 2022-12-19T01:09:59 2022-12-19T01:09:59 [quotedUrls] 2022-12-19T01:09:59 [quotedUrls] nothing found to replace 2022-12-19T01:09:59 Diff after rewrites: diff --git a/pkgs/applications/science/biology/sortmerna/default.nix b/pkgs/applications/science/biology/sortmerna/default.nix index 6884e1955f7..974894554d7 100644 --- a/pkgs/applications/science/biology/sortmerna/default.nix +++ b/pkgs/applications/science/biology/sortmerna/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "sortmerna"; - version = "4.2.0"; + version = "4.3.6"; src = fetchFromGitHub { repo = pname; owner = "biocore"; rev = "v${version}"; - sha256 = "0r91viylzr069jm7kpcgb45kagvf8sqcj5zc1af4arl9sgfs1f3j"; + sha256 = "sha256-5sYnYmhCLdsfT6ih5CEBkYxfGkP8ZOSgTWU0kY2ZKTA="; }; nativeBuildInputs = [ cmake pkg-config ]; 2022-12-19T01:11:36 Received ExitFailure 100 when running Raw command: /nix/store/6fr58pqy02hmgw1h7b9nqmv7vlp3v346-nix-2.3.15/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A sortmerna nix build failed. 1193 | void Runopts::opt_align(const std::string& val) | ~~~~~~~~~~~~~~~~~~~^~~ /build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_filter(const string&)': /build/source/src/sortmerna/options.cpp:1198:45: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;] 1198 | void Runopts::opt_filter(const std::string& val) | ~~~~~~~~~~~~~~~~~~~^~~ /build/source/src/sortmerna/index.cpp: In member function 'void Index::load(uint32_t, uint32_t, std::vector, std::__cxx11::basic_string > >&, Refstats&)': /build/source/src/sortmerna/index.cpp:211:58: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;] 211 | ((NodeElement *&)dst) += 4; | ^~~ /build/source/src/sortmerna/index.cpp:257:82: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;] 257 | ((NodeElement *&)dst) += 4; | ^~~ /build/source/src/sortmerna/options.cpp: In member function 'void Runopts::process(int, char**, bool)': /build/source/src/sortmerna/options.cpp:1368:50: warning: unused parameter 'dryrun' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;] 1368 | void Runopts::process(int argc, char**argv, bool dryrun) | ~~~~~^~~~~~ /build/source/src/sortmerna/cmd.cpp: In member function 'void CmdSession::cmdIndex(Runopts&, std::string&)': /build/source/src/sortmerna/cmd.cpp:250:68: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wsign-compare-Wsign-compare]8;;] 250 | if (index.positions_tbl[it->id].arr[i].seq == std::stoi(refid)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/source/src/sortmerna/cmd.cpp: In member function 'void CmdSession::cmdTest(Runopts&, std::string&)': /build/source/src/sortmerna/cmd.cpp:317:36: warning: unused parameter 'opts' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;] 317 | void CmdSession::cmdTest(Runopts & opts, std::string & cmd) | ~~~~~~~~~~^~~~ /build/source/src/sortmerna/cmd.cpp:317:56: warning: unused parameter 'cmd' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;] 317 | void CmdSession::cmdTest(Runopts & opts, std::string & cmd) | ~~~~~~~~~~~~~~^~~ make[1]: *** [CMakeFiles/Makefile2:216: src/sortmerna/CMakeFiles/smr_objs.dir/all] Error 2 make: *** [Makefile:156: all] Error 2