sortmerna 4.2.0 -> 4.3.6 https://repology.org/metapackage/sortmerna/versions
attrpath: sortmerna
Checking auto update branch...
No auto update branch exists
[version] 
[version] updated version and sha256
[rustCrateVersion] 
[rustCrateVersion] No cargoSha256 or cargoHash found
[golangModuleVersion] 
[golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash
[updateScript] 
[updateScript] skipping because derivation has no updateScript

[quotedUrls]
[quotedUrls] nothing found to replace
Diff after rewrites:
diff --git a/pkgs/applications/science/biology/sortmerna/default.nix b/pkgs/applications/science/biology/sortmerna/default.nix
index 6884e1955f7..974894554d7 100644
--- a/pkgs/applications/science/biology/sortmerna/default.nix
+++ b/pkgs/applications/science/biology/sortmerna/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "sortmerna";
-  version = "4.2.0";
+  version = "4.3.6";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "biocore";
     rev = "v${version}";
-    sha256 = "0r91viylzr069jm7kpcgb45kagvf8sqcj5zc1af4arl9sgfs1f3j";
+    sha256 = "sha256-5sYnYmhCLdsfT6ih5CEBkYxfGkP8ZOSgTWU0kY2ZKTA=";
   };
 
   nativeBuildInputs = [ cmake pkg-config ];

Received ExitFailure 1 when running
Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A sortmerna
nix build failed.
      |                       ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_tmpdir(const std::string&)':
/build/source/src/sortmerna/options.cpp:1036:45: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1036 | void Runopts::opt_tmpdir(const std::string &val)
      |                          ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_align(const std::string&)':
/build/source/src/sortmerna/options.cpp:1193:44: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1193 | void Runopts::opt_align(const std::string& val)
      |                         ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::opt_filter(const std::string&)':
/build/source/src/sortmerna/options.cpp:1198:45: warning: unused parameter 'val' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1198 | void Runopts::opt_filter(const std::string& val)
      |                          ~~~~~~~~~~~~~~~~~~~^~~
/build/source/src/sortmerna/options.cpp: In member function 'void Runopts::process(int, char**, bool)':
/build/source/src/sortmerna/options.cpp:1368:50: warning: unused parameter 'dryrun' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-parameter-Wunused-parameter]8;;]
 1368 | void Runopts::process(int argc, char**argv, bool dryrun)
      |                                             ~~~~~^~~~~~
In file included from /build/source/include/kseq_load.hpp:40,
                 from /build/source/src/sortmerna/readstats.cpp:52:
/build/source/include/kseq.h:171:20: warning: 'int kseq_read(kseq_t*)' defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-function-Wunused-function]8;;]
  171 |         static int kseq_read(kseq_t *seq)                                                                       \
      |                    ^~~~~~~~~
/build/source/include/kseq.h:221:9: note: in expansion of macro '__KSEQ_READ'
  221 |         __KSEQ_READ
      |         ^~~~~~~~~~~
/build/source/include/kseq_load.hpp:43:1: note: in expansion of macro 'KSEQ_INIT'
   43 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
make[1]: *** [CMakeFiles/Makefile2:216: src/sortmerna/CMakeFiles/smr_objs.dir/all] Error 2
make: *** [Makefile:156: all] Error 2