star 2.7.10b -> 2.7.11a https://github.com/alexdobin/STAR/releases attrpath: star Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoSha256 or cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript Diff after rewrites: diff --git a/pkgs/applications/science/biology/star/default.nix b/pkgs/applications/science/biology/star/default.nix index 3383a78e1d38..8e3e0c8d6327 100644 --- a/pkgs/applications/science/biology/star/default.nix +++ b/pkgs/applications/science/biology/star/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "star"; - version = "2.7.10b"; + version = "2.7.11a"; src = fetchFromGitHub { repo = "STAR"; owner = "alexdobin"; rev = version; - sha256 = "sha256-58Y4lzqXwBhRlXcionUg2IhAg5znNUuyr/FsuNZd+5Q="; + sha256 = "sha256-pBVRot3pgoMucQUc0wmSyU2GGgza59K80mjDKOnKKuk="; }; sourceRoot = "${src.name}/source"; Received ExitFailure 1 when running Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A star nix build failed. inlined from 'cram_populate_ref' at cram/cram_io.c:1529:6: /nix/store/jhi4wsbrxfscrf57k46d1lfq1v8d25kx-glibc-2.38-27-dev/include/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 4112 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 |  __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 |  __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_codecs.c: In function 'cram_huffman_encode_init': cram/cram_codecs.c:1289:19: warning: argument 1 value '18446744056529682448' exceeds maximum object size 9223372036854775807 []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Walloc-size-larger-than=-Walloc-size-larger-than=]8;;] 1289 | if (!(codes = malloc(nvals * sizeof(*codes)))) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cram/cram_codecs.c:40: /nix/store/jhi4wsbrxfscrf57k46d1lfq1v8d25kx-glibc-2.38-27-dev/include/stdlib.h:672:14: note: in a call to allocation function 'malloc' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ cram/cram_io.c: In function 'cram_write_SAM_hdr': cram/cram_io.c:2917:13: warning: '__builtin_strncpy' specified bound 4096 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] 2917 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c:2909:9: warning: '__builtin_strncpy' specified bound 4096 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] 2909 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function 'cram_dopen': cram/cram_io.c:3291:9: warning: '__builtin_strncpy' specified bound 20 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] 3291 | strncpy(def.file_id, filename, 20); | ^ ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/md5.o cram/open_trace_file.o cram/pooled_alloc.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o ranlib libhts.a make[1]: Leaving directory '/build/source/source/htslib'