toil 0 -> 1
attrpath: toil
Checking auto update branch...
[version] 
[version] skipping because derivation has updateScript
[rustCrateVersion] 
[rustCrateVersion] No cargoSha256 or cargoHash found
[golangModuleVersion] 
[golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash
[npmDepsVersion] 
[npmDepsVersion] No npmDepsHash
[updateScript] 
[updateScript] Success
[updateScript] 
Going to be running update for following packages:
 - toil-5.12.0

Press Enter key to continue...
Running update for:
 - toil-5.12.0: UPDATING ...
 - toil-5.12.0: DONE.

Packages updated!

Diff after rewrites:
diff --git a/pkgs/applications/science/misc/toil/default.nix b/pkgs/applications/science/misc/toil/default.nix
index 9142676fff48..099665f26716 100644
--- a/pkgs/applications/science/misc/toil/default.nix
+++ b/pkgs/applications/science/misc/toil/default.nix
@@ -6,14 +6,14 @@
 
 python3.pkgs.buildPythonApplication rec {
   pname = "toil";
-  version = "5.12.0";
+  version = "6.0.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "DataBiosphere";
     repo = pname;
     rev = "refs/tags/releases/${version}";
-    hash = "sha256-cTpbQo9tPZifUO59vbnIa3XUinFJ2/5Slfe4yszglFM=";
+    hash = "sha256-sVQvCD15amqQmKjMi5ufzceu1pbYaH4GhyGsKE7pGT8=";
   };
 
   propagatedBuildInputs = with python3.pkgs; [

No auto update branch exists
Received ExitFailure 1 when running
Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A toil
nix build failed.
  File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 940, in exec_module
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "/build/source/src/toil/test/__init__.py", line 57, in <module>
    from toil.lib.accelerators import (have_working_nvidia_docker_runtime,
  File "/build/source/src/toil/lib/accelerators.py", line 22, in <module>
    from toil.job import AcceleratorRequirement
  File "/build/source/src/toil/job.py", line 46, in <module>
    from configargparse import ArgParser
ModuleNotFoundError: No module named 'configargparse'
=============================== warnings summary ===============================
../../nix/store/c0z28k7b8pi17simv71hlfdgdp6n6m6j-python3.11-boto-2.49.0/lib/python3.11/site-packages/boto/plugin.py:40
  /nix/store/c0z28k7b8pi17simv71hlfdgdp6n6m6j-python3.11-boto-2.49.0/lib/python3.11/site-packages/boto/plugin.py:40: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses
    import imp

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
ERROR  - ModuleNotFoundError: No module named 'configargparse'
!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
========================= 1 warning, 1 error in 0.21s ==========================
/nix/store/yq9qag5ak3w15nhcqplnhxpny6295l36-stdenv-linux/setup: line 1582: pop_var_context: head of shell_variables not a function context