2022-12-09T18:43:54 truvari 2.1.1 -> 3.5.0 https://pypi.org/project/truvari/
2022-12-09T18:43:57 attrpath: truvari
2022-12-09T18:43:57 Checking auto update branch...
2022-12-09T18:44:00 [version] 
2022-12-09T18:44:00 [version] skipping because derivation has updateScript
2022-12-09T18:44:00 [rustCrateVersion] 
2022-12-09T18:44:00 [rustCrateVersion] No cargoSha256 found
2022-12-09T18:44:00 [golangModuleVersion] 
2022-12-09T18:44:00 [golangModuleVersion] Not a buildGoModule package with vendorSha256
2022-12-09T18:44:00 [updateScript] 
2022-12-09T18:44:03 [updateScript] Success
2022-12-09T18:44:03 [updateScript] this derivation will be built:
  /nix/store/y480ph1pff61072lk74vwxsr2nn8x2nw-packages.json.drv
building '/nix/store/y480ph1pff61072lk74vwxsr2nn8x2nw-packages.json.drv'...

Going to be running update for following packages:
 - truvari-2.1.1

Press Enter key to continue...
Running update for:
 - truvari-2.1.1: UPDATING ...
 - truvari-2.1.1: DONE.

Packages updated!

2022-12-09T18:44:03 
2022-12-09T18:44:03 [quotedUrls]
2022-12-09T18:44:03 [quotedUrls] nothing found to replace
2022-12-09T18:44:04 Diff after rewrites:
diff --git a/pkgs/applications/science/biology/truvari/default.nix b/pkgs/applications/science/biology/truvari/default.nix
index 31c1fc50ee3..832ca2cd67e 100644
--- a/pkgs/applications/science/biology/truvari/default.nix
+++ b/pkgs/applications/science/biology/truvari/default.nix
@@ -5,13 +5,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "truvari";
-  version = "2.1.1";
+  version = "3.5.0";
 
   src = fetchFromGitHub {
     owner = "spiralgenetics";
     repo = "truvari";
-    rev = "v${version}";
-    sha256 = "14nsdbj063qm175xxixs34cihvsiskc9gym8pg7gbwsh13k5a00h";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-RGI+oD+NGiLhrTtqicBlZJj7p3lo3yH8UfMst4m7q5g=";
   };
 
   postPatch = ''

2022-12-09T18:45:30 No auto update branch exists
2022-12-09T18:45:34 Received ExitFailure 100 when running
Raw command: /nix/store/6fr58pqy02hmgw1h7b9nqmv7vlp3v346-nix-2.3.15/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A truvari
Received ExitFailure 1 when running
Raw command: /nix/store/6fr58pqy02hmgw1h7b9nqmv7vlp3v346-nix-2.3.15/bin/nix log -f . truvari
Standard output:

warning: unknown setting 'experimental-features'
error: Package ‘python3.10-PyVCF-0.6.8’ in /var/cache/nixpkgs-update/worker/worktree/truvari/pkgs/development/python-modules/pyvcf/default.nix:22 is marked as broken, refusing to evaluate.

a) To temporarily allow broken packages, you can use an environment variable
   for a single invocation of the nix tools.

     $ export NIXPKGS_ALLOW_BROKEN=1
     
 Note: For `nix shell`, `nix build`, `nix develop` or any other Nix 2.4+
 (Flake) command, `--impure` must be passed in order to read this
 environment variable.
    
b) For `nixos-rebuild` you can set
  { nixpkgs.config.allowBroken = true; }
in configuration.nix to override this.

c) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowBroken = true; }
to ~/.config/nixpkgs/config.nix.

(use '--show-trace' to show detailed location information)