truvari 0 -> 1
attrpath: truvari
Checking auto update branch...
[version] 
[version] skipping because derivation has updateScript
[rustCrateVersion] 
[rustCrateVersion] No cargoSha256 or cargoHash found
[golangModuleVersion] 
[golangModuleVersion] Not a buildGoModule package with vendorSha256 or vendorHash
[updateScript] 
[updateScript] Success
[updateScript] this derivation will be built:
  /nix/store/01gxls9q3mr43cnqm94lgnklz8hd8b8f-packages.json.drv
building '/nix/store/01gxls9q3mr43cnqm94lgnklz8hd8b8f-packages.json.drv'...

Going to be running update for following packages:
 - truvari-2.1.1

Press Enter key to continue...
Running update for:
 - truvari-2.1.1: UPDATING ...
 - truvari-2.1.1: DONE.

Packages updated!


[quotedUrls]
[quotedUrls] nothing found to replace
Diff after rewrites:
diff --git a/pkgs/applications/science/biology/truvari/default.nix b/pkgs/applications/science/biology/truvari/default.nix
index 412642f523f..859c52eb3b2 100644
--- a/pkgs/applications/science/biology/truvari/default.nix
+++ b/pkgs/applications/science/biology/truvari/default.nix
@@ -5,13 +5,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "truvari";
-  version = "2.1.1";
+  version = "3.5.0";
 
   src = fetchFromGitHub {
     owner = "spiralgenetics";
     repo = "truvari";
-    rev = "v${version}";
-    sha256 = "14nsdbj063qm175xxixs34cihvsiskc9gym8pg7gbwsh13k5a00h";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-RGI+oD+NGiLhrTtqicBlZJj7p3lo3yH8UfMst4m7q5g=";
   };
 
   postPatch = ''

No auto update branch exists
Received ExitFailure 1 when running
Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix-build --option sandbox true --arg config "{ allowBroken = true; allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A truvari
Received ExitFailure 1 when running
Raw command: /nix/store/3nqhcyc7vid1npgcd0m7arg5sn325nhz-nix-2.12.0/bin/nix log -f . truvari
Standard output:

error: Package ‘python3.10-PyVCF-0.6.8’ in /var/cache/nixpkgs-update/worker/worktree/truvari/pkgs/development/python-modules/pyvcf/default.nix:22 is marked as broken, refusing to evaluate.

       a) To temporarily allow broken packages, you can use an environment variable
          for a single invocation of the nix tools.

            $ export NIXPKGS_ALLOW_BROKEN=1

        Note: For `nix shell`, `nix build`, `nix develop` or any other Nix 2.4+
        (Flake) command, `--impure` must be passed in order to read this
        environment variable.

       b) For `nixos-rebuild` you can set
         { nixpkgs.config.allowBroken = true; }
       in configuration.nix to override this.

       c) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
         { allowBroken = true; }
       to ~/.config/nixpkgs/config.nix.
(use '--show-trace' to show detailed location information)